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Like us , dogs need the right balance of beneficial bacteria to restore and maintain a healthy gut. Good bacteria and yeasts mean better absorption of nutrients, less inflammation, better digestion, a tummy that works and a functioning immune system. Even our moods and brain function are affected by our gut microbiome. Probiotics are the best remedy for treating yeast infection in dogs. Kefir contains a variety of bacteria that can destroy yeast and eliminate yeast infection.